Biosystems Simulation Publications

Biological Systems Simulation Journal Articles and Book Chapters:

Aliabadi, S., Yilmaz, E., Akbar, M., Palle, S., Soni, B., & Reena, P. (2011). Scalable Hybrid Algorithms for Large-Scale Parallel Computational Fluid Dynamics Applications Trends in Parallel, Distributed, Grid and Cloud Computing for Engineering (Vol. 27, pp. 187-220).

Burgreen, G., Hester, R., Soni, B., Thompson, D., Walters, K., & Walters, K. (2010). DigitalLung: Application of High-Performance Computing to Biological System Simulation Advances in Computational Biology: AEMB (Advances in Experimental Medicine and Biology) Springer Series (Vol. 680, pp. 573-584).

Hester, R., Brown, A., Husband, L., Iliescu, R., Pruett, D., Summers, R., et al. (2011). HumMod: a modeling environment for the simulation of integrative human physiology. Frontiers in Computational Physiology, 2, 1-12.

Hester, R., Iliescu, R., Summers, R., & Coleman, T. (2011). Systems biology and integrative physiological modelling. Journal of Physiology, 589, 1053-1060.

Iliescu, R., & Lohmeier, T. E. (2010). Lowering of blood pressure during chronic suppression of central sympathetic outflow: Insight from computer simulations. Clin Exp Pharmacol Physiol., 37(2), e24-33.

Summers, R. L., Ward, K. R., Witten, T., Convertino, V. A., Ryan, K. L., Coleman, T. G., et al. (2009). Validation of a Computational Platform for the Analysis of the Physiologic Mechanisms of a Human Experimental Model of Hemorrhage Resuscitation, 80(12), 1405-1410.

Walters, D. K., & Luke, W. H. (2011). Computational Fluid Dynamics Simulations of Particle Deposition in Large-Scale, Multi-Generational Lung Models. ASME Journal of Biomechanical Engineering, 133(011003), 8.

Walters, D. K., & Luke, W. H. (2010). A Method for Three-Dimensional Navier-Stokes Simulations of Large-Scale Regions of the Human Lung Airway. ASME Journal of Fluids Engineering, 132(5), 051101.

Biological Systems Simulation Conference Papers and Presentations:

Ali, M., & Maddipatla, V. (2010). Computational simulation of electrostatic charge effects on inhaled aerosol particle deposition in the human lung. Paper presented at the 2010 ASME Early Career Technical Conference, ASME ECTC, GeorgiaTech, Atlanta, Georgia.

Aliabadi, S., Yilmaz, E., Palle, S., & Soni, B. (2011). Hybrid Finite Element / Volume Method for Natural Convection flows. Paper presented at the Parallel CFD 2011 conference.

Carter, C. B., & Hester, R. L. (2010). Modeling the Physiology of Primary A Hyperaldosteronism using Computer-Based Simulation: A Clinical Learning Tool. Paper presented at the University of Mississippi Department of Medicine Research Day.

Chu, I.-W., Vasquez, E. S., Eyiler, E., Dadgarmoghaddam, M., & Walters, K. B. (2011). The Synthesis and Characterization of Novel 3-D Asymmetric Nanoparticles. Paper presented at the 9th Annual Seeing at the Nanoscale Conference, University of California, Santa Barbara, CA.

Hester, R. L., Coleman, T. G., Iliescu, R., & Summers, R. L. (2009). DigitalHuman (DH): An Integrative Mathematical Model of Human Physiology. Paper presented at the MODSIM.

Hester, R. L., Coleman, T. G., Iliescu, R., & Summers, R. L. (2010). HumMod: An Open Source Integrative Mathematical Model of Human Physiology. Paper presented at the Society for the Simulation in Healthcare.

Husband, L., Preutt, W., Hester, R., & Coleman, T. (2011). pkProject: A Physiological Social Network. Paper presented at the Experimental Biology, Washington, DC.

Pruett, W., & Hester, R. (2011). A Mathematical Model of Calcium Homeostasis via the Bone Exchange Pool. Paper presented at the Experimental Biology, Washington, DC.

Soni, B., Arra, N., & Aliabadi, S. (2011). Flow and particle deposition simulations with heat-transfer in the nine-generation lung airways. Paper presented at the International Conference on Bioinformatics & Computational Biology.

Soni, B., Arra, N., Aliabadi, S., Luke, W., & Walters, K. (2011). Mesh Refinement Study of Flow and Particle Deposition in Human Lung Airway Models. Paper presented at the 20th AIAA Computational Fluid Dynamics conference.

Vasquez, E. S., Jones, Marquita Y., Walters, Keisha B. (2010). Synthesis, Characterization, and Swelling/Contraction Behavior of PNIPAm and PMAA Polymer Brushes Grafted On Gold Substrates. Paper presented at the 2010 AIChE Annual Meeting, Salt Lake City, UT.

Vasquez, E. S., Nicholson, B., & Walters, K. B. (2011). Surface Modification of Iron Oxide (Fe3O4) Micro- and Nano-particles with Stimuli Responsive Polymers. Paper presented at the 2011 Nanotech Conference and Exposition, Boston, MA.

Vasquez, E. S., Walters, Keisha B., Walters, D. Keith. (2010). Transport Modeling of Micro- and Nanometer-Sized Particles in a Human Lung Geometry. Paper presented at the 2010 AIChE Annual Meeting, Salt Lake City, UT.

Walters, D. K., & Luke, W. H. (2010). CFD Prediction of Particle Deposition in Large-Scale Human Lung Models. Paper presented at the ASME International Mechanical Engineering Congress and Exposition.

Walters, D. K., & Luke, W. H. (2009). 3-D Navier-Stokes Simulation of Large-Scale Regions of the Bronchopulmonary Tree. Paper presented at the Proceedings of the 2009 ASME Fluids Engineering Division Summer Meeting, Vail, Colorado.